It's "an FOT" if you say each letter, as a brief poll in the chat the other week confirmed many people do. I say "a FOT" because I pronounce the abbreviation like a word rhyming with "blot." Both are correct; they simply reveal something about how a person vocalizes the acronym.
And, though you no longer need my confirmation, yes, Andy, the plural of "FOT" is "FOT."